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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12515130_12515577_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12515130 - 12515577
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGGA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTTTTGTGATT
Flanking Amino Acid:
TLFKKPIEKVKCFLKCCVYL
Intron Amino Acid Position:
1836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
36.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
31.5
-2.1
3.4
38.5
40.9
Minor BPS
57
0.3
2
81.5
34.7

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173