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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12515714_12516708_F

Intron Information:

Intron Rank:
48
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12515714 - 12516708
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TACTCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAAAA
Flanking Amino Acid:
LWKNHSHEPTAVRLVTELSL
Intron Amino Acid Position:
1882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
71.8
40.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.5
0.6
0.8
74.3
30.5
Minor 5ss
72.2
0.75
2.2
82.4
37.2
Minor BPS
63.9
0.43
1.7
75.11
35.4

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173