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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12520512_12521060_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12520512 - 12521060
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGAATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATTACTAAAACT
Flanking Amino Acid:
TGEVVAFASQIRSLILDNII
Intron Amino Acid Position:
2002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
73.8
0.54
0.9
65.7
39.8
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
51.4
0.12
2
76.06
40.4

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173