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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12527358_12528543_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12527358 - 12528543
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCATTCCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
ASCLPLVFGKAIHAIA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.4
40.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.7
0.67
0.8
77.9
30.7
Minor 5ss
30
-2.3
3.1
41.6
45
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019635
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026992
12527339 - 12530370
3032