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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12528615_12529516_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12528615 - 12529516
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CATTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TAATCAATGATT
Flanking Amino Acid:
EFCFDPLEKGLALRSVNSSR
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.3
74.1
38.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
87.1
0.84
0.7
84.7
29.7
Minor 5ss
36
-1.6
2.7
37.8
40.1
Minor BPS
49.6
0.05
1.9
71.25
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019635
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026992
12527339 - 12530370
3032