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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12541188_12541982_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12541188 - 12541982
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTTTCCATATTG
Flanking Amino Acid:
FACDNGLNVRGGKPDDITVL
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.5
0.66
0.9
73.6
35.3
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
52.9
-0
2
64.01
44.2

Associated Gene:

Gene:
PPTC7
Ensembl Gene ID:
ENSAPLG00000008481
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008814
12541129 - 12559845
18717