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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12542113_12544109_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12542113 - 12544109
Intron Length:
1997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCGTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAAAA
Flanking Amino Acid:
MILQELKKLKNSNYESIQQT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
0.8
73.7
35.6
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
56.3
0.2
1.7
70.09
35.6

Associated Gene:

Gene:
PPTC7
Ensembl Gene ID:
ENSAPLG00000008481
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008814
12541129 - 12559845
18717