About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12546613_12549201_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12546613 - 12549201
Intron Length:
2589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACGAT
U12 Branch Point Sequence:
GCTCCAGTTACG
Flanking Amino Acid:
ELLQNKVPLLGSSTACIVVL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
62
0.3
1.4
60.8
45.4
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
40
-0.9
2.4
47.09
45.2

Associated Gene:

Gene:
PPTC7
Ensembl Gene ID:
ENSAPLG00000008481
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008814
12541129 - 12559845
18717