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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12549382_12559643_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12549382 - 12559643
Intron Length:
10262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
VARHRSADVLGVADGVGGWR
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.9
35.3
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
31.1
-2.2
2.6
30
35.1
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
PPTC7
Ensembl Gene ID:
ENSAPLG00000008481
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008814
12541129 - 12559845
18717