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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12568445_12570307_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12568445 - 12570307
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTGCTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTG
Flanking Amino Acid:
LFTTCSVPIVTGDSRLCSQK
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.6
32.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.9
77.4
35.8
Minor 5ss
33.4
-1.9
3.2
39.2
39.9
Minor BPS
59.1
0.15
1.6
64.63
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030502
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039736
12567414 - 12571871
4458