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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12572084_12572193_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12572084 - 12572193
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGGAAATA
5'SS Class:
weak_major
3'SS Sequence:
TTTTATTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTACTTAAAC
Flanking Amino Acid:
AQCYMMLTDAYGVPIQTVDG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1
55.2
37.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83
0.74
0.9
80.8
36.4
Minor 5ss
31.8
-2.1
3.4
44.4
44.5
Minor BPS
71.1
0.64
1.6
79.69
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008574
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044195
12572024 - 12582351
10328
ENSAPLT00000008936
12572024 - 12580092
8069