Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12576447_12577295_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12576447 - 12577295

Intron Length:

849

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGGGTACA

5'SS Class:

major

3'SS Sequence:

GTTTAATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTCTAATTAATA

Flanking Amino Acid:

DEMCMNVVLGVSYHITYTDA

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

67.6

39.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

81.7

0.71

0.9

40.1

Minor 5ss

28.7

-2.4

2.8

25.5

36.6

Minor BPS

61.3

0.35

1.8

73.53

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044195

12572024 - 12582351

10328

ENSAPLT00000008936

12572024 - 12580092

8069