Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12577422_12577804_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12577422 - 12577804

Intron Length:

383

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGCT

5'SS Class:

strong_major

3'SS Sequence:

ATCTGTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

AATACTGTAAAT

Flanking Amino Acid:

QQSFEISFTQVNTKPVPLSG

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

1.1

78.8

35.5

Major BPS

77.9

0.69

0.8

75.9

Major PPT

75.7

0.58

41.3

Minor 5ss

40.9

-1

3.2

59.5

Minor BPS

48.8

-0

2.1

69.72

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044195

12572024 - 12582351

10328

ENSAPLT00000008936

12572024 - 12580092

8069