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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12578753_12579467_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12578753 - 12579467
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAACTCT
5'SS Class:
weak_major
3'SS Sequence:
TAACACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GAATTTATAACA
Flanking Amino Acid:
IHLQNSEQVKSPCQIPVSLE
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.2
60.6
39
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.3
0.55
0.9
70
40.5
Minor 5ss
43.9
-0.7
2.9
58.7
39.9
Minor BPS
54.8
0.15
1.6
62.96
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008574
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008936
12572024 - 12580092
8069