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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12578753_12582315_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12578753 - 12582315
Intron Length:
3563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAACTCT
5'SS Class:
weak_major
3'SS Sequence:
CCACTAGCAGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTCATTTTACAA
Flanking Amino Acid:
IHLQNSEQVKVSSTQGLCSR
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.2
60.6
39
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
44.3
-0.3
1.7
43.7
36.3
Minor 5ss
43.9
-0.7
2.9
58.7
39.9
Minor BPS
48.6
-0.1
1.7
60.21
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008574
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044195
12572024 - 12582351
10328