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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12581804_12582145_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12581804 - 12582145
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTCTCCAACA
Flanking Amino Acid:
EQLEHSCAEKEREIERLNKI
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.9
0.56
0.9
70.6
35
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
56.2
0.19
1.9
72.31
39.8

Associated Gene:

Gene:
HVCN1
Ensembl Gene ID:
ENSAPLG00000008786
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009144
12581738 - 12584827
3090