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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12582259_12583784_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12582259 - 12583784

Intron Length:

1526

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGCACA

5'SS Class:

major

3'SS Sequence:

AATTGTCTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

ACATTGTAAAAT

Flanking Amino Acid:

RLWRVARIINGIILSVKTRS

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

64.3

41.7

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

0.52

0.9

65.5

40.2

Minor 5ss

38.4

-1.3

3.1

46.1

44.2

Minor BPS

43.3

-0.4

2.3

59.56

43.8

Associated Gene:

Gene:

HVCN1

Ensembl Gene ID:

ENSAPLG00000008786

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009144

12581738 - 12584827

3090