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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12584278_12584594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12584278 - 12584594

Intron Length:

317

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGCCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTCAT

U12 Branch Point Sequence:

TCTTTGCCAACA

Flanking Amino Acid:

KKLFSSHRFQIVIVCLVIVD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.1

37.5

Major BPS

74.4

0.61

1.2

77.7

37.1

Major PPT

74.9

0.56

0.9

70.1

35.3

Minor 5ss

25.6

-2.8

3.1

31.9

42.9

Minor BPS

44.6

-0.4

2.4

63.62

42.9

Associated Gene:

Gene:

HVCN1

Ensembl Gene ID:

ENSAPLG00000008786

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009144

12581738 - 12584827

3090