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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12590654_12591062_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12590654 - 12591062
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
TTATCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATTTGCTTAATG
Flanking Amino Acid:
VDETLMCSFQILKPAEKKKP
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
87.3
0.84
0.7
85.3
29.1
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
68.7
0.45
1.8
73.58
39.3

Associated Gene:

Gene:
PPP1CC
Ensembl Gene ID:
ENSAPLG00000008831
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046876
12590564 - 12605263
14700
ENSAPLT00000026125
12590564 - 12598340
7777
ENSAPLT00000009185
12590564 - 12598749
8186