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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12591198_12591661_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12591198 - 12591661
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TTCTCTCCAAAG
Flanking Amino Acid:
DLDLICRAHQVVEDGYEFFA
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
73.5
0.53
1
74.9
27.7
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
46.9
-0.3
2
57.57
43.9

Associated Gene:

Gene:
PPP1CC
Ensembl Gene ID:
ENSAPLG00000008831
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046876
12590564 - 12605263
14700
ENSAPLT00000026125
12590564 - 12598340
7777
ENSAPLT00000009185
12590564 - 12598749
8186