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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12591886_12592546_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12591886 - 12592546
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
TGTGTCTTACTT
Flanking Amino Acid:
VDEKIFCCHGGLSPDLQSME
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
68.7
0.42
1
62.7
42.8
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
58.9
0.36
1.7
75.64
41.8

Associated Gene:

Gene:
PPP1CC
Ensembl Gene ID:
ENSAPLG00000008831
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046876
12590564 - 12605263
14700
ENSAPLT00000026125
12590564 - 12598340
7777
ENSAPLT00000009185
12590564 - 12598749
8186