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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12594481_12595654_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12594481 - 12595654
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATACTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAATA
Flanking Amino Acid:
LELEAPLKICGDIHGQYYDL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.8
0.6
0.9
70.4
35.4
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
69.9
0.62
1.3
76.75
33.9

Associated Gene:

Gene:
PPP1CC
Ensembl Gene ID:
ENSAPLG00000008831
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009185
12590564 - 12598749
8186
ENSAPLT00000046876
12590564 - 12605263
14700
ENSAPLT00000026125
12590564 - 12598340
7777