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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12595783_12598287_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12595783 - 12598287
Intron Length:
2505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGACAGAG
5'SS Class:
weak_major
3'SS Sequence:
TTCCAACAGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGACTTCTAACT
Flanking Amino Acid:
EMKRLERDKLLGSKPGKNVQ
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.2
46.3
37.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
45.6
-0.2
1.7
51.6
41.9
Minor 5ss
32.8
-2
3.5
47.6
47.9
Minor BPS
54
0.2
1.7
71.65
38.8

Associated Gene:

Gene:
PPP1CC
Ensembl Gene ID:
ENSAPLG00000008831
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026125
12590564 - 12598340
7777