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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12622487_12622811_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12622487 - 12622811
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGCGCGGC
5'SS Class:
major
3'SS Sequence:
TCTCCACGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
CAGGGTGTAACT
Flanking Amino Acid:
VEQSTQAYEQRVEALARISA
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.1
49
42.3
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
72
0.5
0.9
65.9
34.8
Minor 5ss
30.7
-2.2
3.5
40.8
45.9
Minor BPS
41.6
-0.5
2.3
55.71
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004230
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004335
12621620 - 12625328
3709