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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12623464_12623887_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12623464 - 12623887
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTCC
5'SS Class:
major
3'SS Sequence:
TGTGTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CTAACTCTACCC
Flanking Amino Acid:
KLQQRIKDLQDEITLFTTDQ
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
68.5
37.5
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
82.7
0.74
0.9
76.6
37.7
Minor 5ss
43
-0.8
2.5
54.2
43
Minor BPS
45.7
-0.3
1.9
56.35
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004230
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004335
12621620 - 12625328
3709