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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12624964_12625155_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12624964 - 12625155
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGCCAT
U12 Branch Point Sequence:
TTTTCTCTGGCA
Flanking Amino Acid:
MEGAADATDAFEAPLDHARL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
65.6
40.2
Major BPS
43.9
-0.3
1.4
47.5
46
Major PPT
83.3
0.75
0.9
81.1
30.9
Minor 5ss
33.8
-1.8
3.4
50
46.2
Minor BPS
43.9
-0.4
3.6
74.9
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004230
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004335
12621620 - 12625328
3709