About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12626123_12626551_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12626123 - 12626551
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
GCCTCTCCACCC
Flanking Amino Acid:
TQGERFSQEEVDQMFAAFPP
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
86.4
0.82
0.9
84.7
30.1
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
41.2
-0.6
2
47.43
42.3

Associated Gene:

Gene:
MYL2
Ensembl Gene ID:
ENSAPLG00000004324
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004439
12626024 - 12628158
2135