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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12626601_12626683_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12626601 - 12626683
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
CTCTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCACCTCGACC
Flanking Amino Acid:
DPEGKGLKSAYIKEMLMTQG
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
66.6
32.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
84.9
0.78
0.8
79.6
32.4
Minor 5ss
29.4
-2.4
3.1
34.1
36.3
Minor BPS
54.3
0.12
1.7
62.81
43

Associated Gene:

Gene:
MYL2
Ensembl Gene ID:
ENSAPLG00000004324
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004439
12626024 - 12628158
2135