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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12627766_12627923_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12627766 - 12627923
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAC
U12 Branch Point Sequence:
TGACCCCCAGCC
Flanking Amino Acid:
EQAQIQEFKEAFTIMDQNRD
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
59.6
0.24
1.2
51.4
43.9
Major PPT
73.6
0.53
0.8
64.5
36.5
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
43.6
-0.5
2
55.54
41.6

Associated Gene:

Gene:
MYL2
Ensembl Gene ID:
ENSAPLG00000004324
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004439
12626024 - 12628158
2135