Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12667486_12673965_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12667486 - 12673965

Intron Length:

6480

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGTAT

5'SS Class:

major

3'SS Sequence:

GCCTCTTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCAC

U12 Branch Point Sequence:

TTCCCTCTGAGC

Flanking Amino Acid:

SREFKKNVPEQSRSLLQPHL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

69.1

Major BPS

64.9

0.37

29.8

Major PPT

0.41

60.3

40.3

Minor 5ss

36.7

-1.5

3.6

55.1

49.1

Minor BPS

46.4

-0.3

1.9

59.64

39.9

Associated Gene:

Gene:

CUX2

Ensembl Gene ID:

ENSAPLG00000004382

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004516

12664077 - 12688732

24656