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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12678552_12679211_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12678552 - 12679211
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGAG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGGCACTGACCC
Flanking Amino Acid:
LLQRNEAEKQKGLQEAQLTL
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.2
39.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
32.7
-2
3.4
39.6
40.7
Minor BPS
43.2
-0.5
1.8
49.39
40

Associated Gene:

Gene:
CUX2
Ensembl Gene ID:
ENSAPLG00000004382
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004516
12664077 - 12688732
24656