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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12680170_12680598_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12680170 - 12680598

Intron Length:

429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGGAGC

5'SS Class:

major

3'SS Sequence:

CCTCTCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

TGGGAGCTGACG

Flanking Amino Acid:

ACCSPQGAAGDKVNYSMCSG

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

63.9

42.4

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

69.7

0.44

0.9

65.4

30.5

Minor 5ss

26.7

-2.7

2.9

25.7

36.9

Minor BPS

36.1

-1.2

2.3

40.79

43.4

Associated Gene:

Gene:

CUX2

Ensembl Gene ID:

ENSAPLG00000004382

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004516

12664077 - 12688732

24656