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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12681054_12681156_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12681054 - 12681156
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCCCAC
U12 Branch Point Sequence:
CCCGGCCCACCG
Flanking Amino Acid:
VASASCSLPQSMSKPEEAAL
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.7
92.8
13.3
Major BPS
41.9
-0.5
1.3
43.8
40.8
Major PPT
83
0.74
0.8
77.3
31.4
Minor 5ss
23.6
-3
3.9
35.5
41.2
Minor BPS
30.5
-1.6
2.1
26.96
42.4

Associated Gene:

Gene:
CUX2
Ensembl Gene ID:
ENSAPLG00000004382
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004516
12664077 - 12688732
24656