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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12685577_12686227_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12685577 - 12686227
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CGGTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GTGCCACTAACC
Flanking Amino Acid:
GISQQPTPSQASPAEPQPSP
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
69.9
0.45
1
61.7
40
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
49
-0
2
63.22
41.3

Associated Gene:

Gene:
CUX2
Ensembl Gene ID:
ENSAPLG00000004382
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004516
12664077 - 12688732
24656