About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12686812_12686892_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12686812 - 12686892
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTGCAG
U12 Branch Point Sequence:
TTCTCCTTTCCT
Flanking Amino Acid:
LRDMKKLEKKAYLKRRYGLM
Intron Amino Acid Position:
1159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
39.6
-0.6
1.7
46.5
47
Major PPT
85.5
0.8
0.7
80.6
24.7
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
47.7
-0.1
3.6
84.03
42.9

Associated Gene:

Gene:
CUX2
Ensembl Gene ID:
ENSAPLG00000004382
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004516
12664077 - 12688732
24656