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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12687167_12688071_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12687167 - 12688071
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
CGTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGATGCTGATGC
Flanking Amino Acid:
NTVINWFHNYRSRMRREMLV
Intron Amino Acid Position:
1250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.8
42.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
69.3
0.43
0.9
62.1
34.8
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
39.2
-0.8
2.2
45.75
42.3

Associated Gene:

Gene:
CUX2
Ensembl Gene ID:
ENSAPLG00000004382
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004516
12664077 - 12688732
24656