Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12718856_12719170_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12718856 - 12719170

Intron Length:

315

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGGTG

5'SS Class:

major

3'SS Sequence:

CTCCTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTAAC

U12 Branch Point Sequence:

GGCAGGGTAACG

Flanking Amino Acid:

LTFNFQGRAKHLRLSLTERG

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.1

61.3

43.5

Major BPS

46.7

-0.2

1.4

47.1

44.6

Major PPT

74.8

0.56

0.7

24.8

Minor 5ss

31.1

-2.2

3.9

49.3

Minor BPS

33.8

-1.3

2.6

37.03

44.9

Associated Gene:

Gene:

SH2B3

Ensembl Gene ID:

ENSAPLG00000031069

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041374

12705737 - 12719942

14206