About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12719343_12719628_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12719343 - 12719628
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
CTTCCATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTCCTTCCATC
Flanking Amino Acid:
SYVVVLPQPPAPSSGTAVPV
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
65
0.37
1.3
76.1
38
Major PPT
75.3
0.57
0.8
68.9
30.5
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
47.1
-0.2
1.9
59.42
40.4

Associated Gene:

Gene:
SH2B3
Ensembl Gene ID:
ENSAPLG00000031069
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041374
12705737 - 12719942
14206