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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12726243_12729654_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12726243 - 12729654
Intron Length:
3412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTATACTAAAGA
Flanking Amino Acid:
NPPHMAHVPQAHVQSGMVPS
Intron Amino Acid Position:
992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
51
0.03
2.1
69.13
43

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390