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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12729883_12730742_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12729883 - 12730742

Intron Length:

860

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAGCT

5'SS Class:

major

3'SS Sequence:

TCTTTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

ATAACATAAACC

Flanking Amino Acid:

GSHPAPSPVQHHQHQAAQAL

Intron Amino Acid Position:

916

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

1.1

72.5

37.3

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

95.2

1.02

0.5

91.6

19.5

Minor 5ss

38.6

-1.3

3.4

57.4

46.8

Minor BPS

49.7

-0

64.09

40.7

Associated Gene:

Gene:

ATXN2

Ensembl Gene ID:

ENSAPLG00000008724

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009136

12725146 - 12768535

43390