About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12730889_12740543_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12730889 - 12740543
Intron Length:
9655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCATCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTGTTAAAT
Flanking Amino Acid:
GAHEQTHAMYVSTGSLAQQY
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.8
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
81.1
0.7
0.8
74.8
34.8
Minor 5ss
32.5
-2
3.2
39.7
40.4
Minor BPS
51.9
0.14
2.2
72.17
44.9

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390