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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12743475_12744788_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12743475 - 12744788
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATAGCTTAAACT
Flanking Amino Acid:
YPVPVSPGVQPLYPIPMTPM
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.7
0.67
0.9
76.4
37.6
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
58.5
0.35
1.8
74.74
42.3

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390