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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12744942_12745041_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12744942 - 12745041
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
CATTGCTGAACT
Flanking Amino Acid:
KEFNPRSFAQPKPSTTPTSP
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
75.1
0.56
0.9
69.3
36.2
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
60.3
0.4
2
78.11
43.8

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390