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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12746713_12747370_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12746713 - 12747370
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
TTATATTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TGGTCTTATATT
Flanking Amino Acid:
SPSFPKPESKGVSPIVSEHR
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
76.2
0.59
1
73.3
41.4
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
48.7
-0
2
67.81
43.6

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390