About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12747479_12748208_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12747479 - 12748208
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTATAA
U12 Branch Point Sequence:
TTGTGTATAAGA
Flanking Amino Acid:
SNRAVTPSSEAKDTRLQDQR
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
54.9
0.12
1.2
53
42.8
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
46.4
-0.2
2.2
63.48
43.3

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390