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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12748398_12749931_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12748398 - 12749931
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TATCCCATAACT
Flanking Amino Acid:
GGTWSSVVSGVPRLSPKTHR
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
74.1
38.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
81.1
0.7
0.9
73.5
41.9
Minor 5ss
33.2
-1.9
2.9
33
42.2
Minor BPS
72.6
0.79
1.6
88.46
35.4

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390