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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12750115_12752175_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12750115 - 12752175
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAC
5'SS Class:
major
3'SS Sequence:
TTCTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AAGTACTTATTG
Flanking Amino Acid:
STMPKRMSSEGPPRMSPKAQ
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.6
35
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
91.4
0.93
0.6
91.5
19.8
Minor 5ss
36.5
-1.5
3.3
50
46.5
Minor BPS
48.5
-0.2
1.8
51.98
42.6

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390