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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12752386_12753898_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12752386 - 12753898
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTCCTTCATA
Flanking Amino Acid:
SGADQRVVNGGVPWPSPCPS
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.8
1.18
0.7
98.3
5.31
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.9
0.7
1
81.2
36.5
Minor 5ss
30
-2.3
3.8
44.9
43.2
Minor BPS
70.2
0.63
1.7
78.78
38.5

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390