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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12754078_12754595_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12754078 - 12754595
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTGGCA
5'SS Class:
major
3'SS Sequence:
TGCTCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TCTTCCTCAACG
Flanking Amino Acid:
NEREGHSVNTRENKYVPPGQ
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.7
39.3
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
79.3
0.66
0.9
76.4
37.7
Minor 5ss
28.5
-2.5
3.6
39.4
46
Minor BPS
73.3
0.59
1.6
75.75
42

Associated Gene:

Gene:
ATXN2
Ensembl Gene ID:
ENSAPLG00000008724
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009136
12725146 - 12768535
43390