Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12754794_12757322_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12754794 - 12757322

Intron Length:

2529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CATTGTCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTCCTTTCCATT

Flanking Amino Acid:

STYDSSLSSYTVPLERDNSE

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

1.2

82.3

32.2

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

76.7

0.6

0.8

73.8

36.5

Minor 5ss

46.1

-0.4

2.7

60.9

37.1

Minor BPS

45.4

-0.2

1.9

64.38

41.1

Associated Gene:

Gene:

ATXN2

Ensembl Gene ID:

ENSAPLG00000008724

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009136

12725146 - 12768535

43390